UCSC Text Search of INTRON TABLE
Text pattern looks in all text fields (ORF name, comments, description, etc)
Text Pattern 1
Text Pattern 2
Text Pattern 3
Chromosome (ie X or chrX)
Transcripts with
or more Introns
Intron Length, minimum
maximum
Lariat Length, minimum
maximum
Tail Length, minimum
maximum
Intron sequence contains
Upstream (exon) sequence contains
Downstream (exon) sequence contains
Information and Examples
This allows you to search the data within and behind the Intron Table. The main Intron Table does not show all available information, more information on each specific intron is found on their own report page.
The
Description Text Pattern
entries search the
Description
column text, the
Yname or synonyms
entries search only the name and synonyms columns, and the
Splicing Verification type
entries search the hidden field that has keywords we've entered about our feelings if the intron splices or not (this data is available on each individual report page. We are constantly updating this, expect it to change. Standard keywords in use now are
yes
,
maybe
,
computer
and
prediction
.).
Splicing Verification references/links
search the (typically) URL links about the intron, and
Ares lab comments
search the text added by our lab.
The minus sign,
-
, is a special case and stands for "items that have no text", and can be used in all fields (except Yname and Number). Multiple synonyms are allowed in the Synonyms entry, using standard wildcard symbols and perl regular expressions (particularly for multiple synonyms use the vertical bar character '|' as in ygr|ybr|ycr ).
Examples
To find all entries that have NO text description, enter a
-
in the Description field.
To find all entries that have the text "ribosom" in their text description, enter
ribosom
in the Description field.
To do the above "ribosom" search and only have those with no verification text, enter
ribosom
in the Description field and
-
in the Splicing field.